Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015849015.1_cds_XP_016510636.1_23453
CDS Infomation

[gene=LOC107827918] [db_xref=GeneID:107827918] [protein=cyclic nucleotide-gated ion channel 1-like] [protein_id=XP_016510636.1] [location=join(2059..2090,2595..3159,3246..3458,3749..4044,4164..4275,4900..5136,5796..6190,7143..7446)] [gbkey=CDS]
Sequence

ATGATGAATCTCAAACAAGATAAATATGTAAGGTTTGAGGACTGGAAGTCAGAAGAGTCA
TCTTTCAACTCTCCAAATAACAGGCCATTTCATATCAGAAAACCATCATTTAGTTTGTTG
ATGAGTAACATTAGAAGAAGGCTTGAGAGTGGTTCTGAAAGAATTAGTAGTTGGAGAAAA
TCAATACGCGTCCATCCTCTAACCGCTAAACCAACAAAAGATCAATCTATCTCGTCAAAG
AAACAAATTCTTGATCCTCAGGGGCGATTTCTTCAGCAATGGAACAAAATATTTGTATTG
ATTTGTACAATTGCAGTGTCATTGGATCCACTATTCTTCTACATACCTGTCATTGATAAC
GAAAACAAGTGCCTTGATTTGGACACGACGTTAAAGATCACTGCTTGTGTTCTACGTTCG
ATCACTGATCTTTTCTATATCTTTCACATTATCTTGCAATTTCGTACTGGTTTTATCCCT
CCTTCTTCTCGAGTATTTGGAAGGGGTGAGTTGATTGAAGATTCCTCTGCTATAGCCAAG
AGATATTTGAAATCTTATTTCATTGTTGATATTTTAGCAGTTCTTCCACTTCCACAGATT
GTGATATTGATTATCAGTCCAAGTGTGAATAGCCCGATTTCTCTAGCGACGAAAGAAATC
TTGAAGATTGTCATTTTTGTCCAATATGTTCCAAGAATATTTAGAATTTATCCATTGTAT
AAAGAAGTAACAAGAACTGCAGGCTTATTTACAGAAACGGCATGGGGTGGAGCTGCTTTC
AACCTTTTCCTTTACATGTTAGCCAGTAATGTAGTCGGAGCCTTCTGGTACTTGATCTCA
GTAGAACGCCAAGATACATGTTGGCGCGATGCATGTGATAAGATTGACTCATGTTCTTTA
GACAACTTATACTGTGGAGGAAACAGAAACGGAAACGCTTTGCTTCTAAATTCTTCTTGC
CCTCTCCTGAAATCAGAAGATATAAAAGATCCAAATGACTTTGATTTTGGAATATTTCTT
GATGCTCTTCAGTTTCGGATAGTAGAAAAGCAAAAATTCTGGTCCAAACTCTTCTATTGC
TTTTGGTGGGGACTGAGAAACTTAAGTTCTCTTGGCCAAAACCTTAAGACAAGCACCTTT
GTTGGGGAGATTCTCTTTGCTGTCTTCATTTCAATTATTGGGCTAATCTTGTTTTCCTTG
CTTATTGGCAATATGCAGAAATATTTGCAGTCTATCACAGTAAGAGTAGAAGAGATGAGA
GTGAGAAGGCGAGACGCAGAGCAATGGATGTCTCATCGCATGCTTCCTGATAATCTGAGA
GCACGAATTAGAAGACATGAACAGTACAAATGGCAAGAAACCAGGGGTGTAGAGGAAGAT
TTACTTATTCATAATCTTCCTAGAGACTTGAGAAGAGATTTAAAGCGCCATCTCTGTTGG
TCTTTGGTTAAAAGAGTTCCAATGTTTGAGAAAATGGATGAACAATTACTAGATGCAATG
TGTGGTCGACTTAAACCAGCACTCTACACAGAGAAAAGTTTCATAATCCGAGAAGGCGAT
CCAGTAGATGAGATGCTCTTTCTAATGAGAGGTACTCTAATAACTATGACAACAAATGGT
GGAAGAACTGGTTTTTTCAACTCTGTATCACTCAAAGCTGGTGATTTCTGTGGAGAGGAG
CTTCTTACTTGGGCTTTAGACCCTCACACTTCCTCTAGTCTTCCTACTTCAACAAGAACA
GTTCAAGCTGAAACTGATATAGAAGCTTTTGCCCTCACTGCTGATGATCTCAAGTTTGTT
GCCTCACAGTTTCGACGTCTTAATAGCAAACAGCTTCAACATAGTTTCAGGCTCTACTCA
CAGCAATGGAGGACATGGGGTGCATGCTTTATACAAGTAGCATGGCGTCGACATTGTAGG
AACAAGCTTGAGAAATCTTTAAGAGAGGAAGAAGATAGATTGCAGGTTGCATTAGCAAAA
GAGAGTACAAATGCACCAAGTCTTGGAGCTACCATTTATGCATCAAGATTTGCTGCTAAT
GCGCTGCGCGCCTTGCGACGCAACCATACAACTGGTGCCAAATTATCTCCCACACTACCT
CTACTGCTTCAGAAACCAGCTGAACCAAATTTCAGTGAGGAAAATCATTCATGA

Peptide Sequence

PEP ID

XP_016510636.1
PEP Infomation

PREDICTED: cyclic nucleotide-gated ion channel 1-like [Nicotiana tabacum]
Sequence

MMNLKQDKYVRFEDWKSEESSFNSPNNRPFHIRKPSFSLLMSNIRRRLESGSERISSWRK
SIRVHPLTAKPTKDQSISSKKQILDPQGRFLQQWNKIFVLICTIAVSLDPLFFYIPVIDN
ENKCLDLDTTLKITACVLRSITDLFYIFHIILQFRTGFIPPSSRVFGRGELIEDSSAIAK
RYLKSYFIVDILAVLPLPQIVILIISPSVNSPISLATKEILKIVIFVQYVPRIFRIYPLY
KEVTRTAGLFTETAWGGAAFNLFLYMLASNVVGAFWYLISVERQDTCWRDACDKIDSCSL
DNLYCGGNRNGNALLLNSSCPLLKSEDIKDPNDFDFGIFLDALQFRIVEKQKFWSKLFYC
FWWGLRNLSSLGQNLKTSTFVGEILFAVFISIIGLILFSLLIGNMQKYLQSITVRVEEMR
VRRRDAEQWMSHRMLPDNLRARIRRHEQYKWQETRGVEEDLLIHNLPRDLRRDLKRHLCW
SLVKRVPMFEKMDEQLLDAMCGRLKPALYTEKSFIIREGDPVDEMLFLMRGTLITMTTNG
GRTGFFNSVSLKAGDFCGEELLTWALDPHTSSSLPTSTRTVQAETDIEAFALTADDLKFV
ASQFRRLNSKQLQHSFRLYSQQWRTWGACFIQVAWRRHCRNKLEKSLREEEDRLQVALAK
ESTNAPSLGATIYASRFAANALRALRRNHTTGAKLSPTLPLLLQKPAEPNFSEENHS

Transcript Sequence

Gene sequence data has not been registered.